Install

Install from Pypi

Note

We support python version >=3.6 in Ubuntu >= 16.04. It should work with other Linux version too. If you need support of other python version or OS, please create an issue in github.

Install the version released in pypi:

pip3 install chunkflow

Note

You need g++>=4.8 since some dependent packages need to compile c++ code.

Manual Installation

Install the latest from repo:

git clone https://github.com/seung-lab/chunkflow.git
cd chunkflow
pip install -r requirements.txt
python setup.py install

Note

You need g++>=4.8 since some dependent packages need to compile c++ code.

Use Docker Image without Installation

We have built docker images ready to use. You can use docker images directly without installation and configuration. The docker images are in Docker Hub.

You can get the image by:

docker pull seunglab/chunkflow